Introduction
Mountain ecosystems are sensitive
areas that respond to climate and environmental changes. In recent years, the
vegetation of mountain ecosystems has undergone great changes due to the impact
of climate change and human activities. In alpine ecosystems, once an invasion
occurs, serious consequences will occur, including extinction of species and
degradation of ecosystem function (Li and Hua 2000;
Hartmann et al. 2017). The
invasion of low-altitude plants to high-altitude areas has become a research
hotspot; many studies have studies on the aboveground changes (Grace 2002; Wearne
and Morgan 2006). However, few studies focus on the understand
change.
Soil microorganism is an important
part of terrestrial ecosystems and acts a key function in the biogeochemical
cycle (Hartmann et al.
2017). The composition and diversity of above ground plants can cause changes
in the ecological environment, partly affect the changes in soil environmental
factors (Frey et al. 2016) and thus
affect the soil microbial diversity and soil microbial
structure composition. Similarly, variations of the structure as
well as function of soil microbial communities can also affect plant
productivity by regulating plant nutrient availability (Rime et al. 2016).
The Changbai Mountain tundra belt
is only an alpine tundra belt in China. At present, there are no reports of
soil microbial diversity under plant invasion in the tundra belt of Changbai
Mountain. The phenomenon that Betula
ermanii Charm invasive tundra on the northern slope of Changbai Mountain
has been recognized and been attributed to global climate warming (Wang et al. 2012). In addition, Jin et al. (2016)
research has proved that the herbaceous plants represented by Deyeuxia angustifolia under the Betula ermanii forest in western slope
gradually invaded into the tundra belt (Jin et
al. 2016). From the current vegetation distribution, the distribution range
of D. angustifolia has covered a
large range of the northern slope tundra and the impact on landscape level and
community level is very significant. Therefore, research on the soil bacterial
diversity of different altitudes alone the invasion of D. angustifolia is very necessary, especially to reveal the change
of soil bacterial composition structure and the impact on the ecosystem. To
test these hypotheses, soil communities sampled at D. angustifolia at six elevations and investigated by using the
barcoded pyrosequencing technique. The objectives of this study were to
elucidate (1) changes in soil physicochemical properties at elevation
gradients, (2) differences in bacterial structure and diversity under different
altitudes.
Materials and Methods
Research site
Changbai Mountains (126◦55’–129◦00’E;
41◦23’–42◦36’N) is located in Jilin Province,
of northeast China. The four slops of the Changbai mountains differed, which
the average slope of northern slope <3% and the other three average slopes
<10%. The local climate is a typical continental temperate monsoon climate.
The mean annual precipitations are 700–1400 mm and increases from 600 to 1200
m. The local temperatures are between 2.9–4.8℃ and increases along
altitudinal gradient from 600 to 1200 m.
The collection of the soil samples
was performed on a northern slope belonging to Changbai Mountain on 20 June
2018. 6 elevational gradients that districted D. angustifolia population was selected, representing six typical D. angustifolia population regions. At
each elevation, soil samples from three different plots (25 m × 25 m) were
collected to ensure independence among them. In every single plot, samples of
the soil organic layer were gathered at 10 arbitrary sites with a sterile blade and assembled into one
specimen. Before the homogenization of the soil part contained in every
specimen, a removal was conducted to get rid of the residuals as well as the
roots that can be seen by naked eyes. Afterwards, sieve was conducted on the
newly collected soil specimen with 2 mm meshes to subdivide into two
approximately equal parts. One part of fresh soil was stored at 4℃ and
the remaining fresh soil was stored at -80℃ before the DNA extraction.
Identification for the soil chemical characteristics
A pH meter was implemented to
identify the soil pH, where prior to the dissolution of a 1:2.5 (wt./vol.) soil
proportion within 0.01 M CaCl2 solution,
a 30 min shake was performed. The total nitrogen (TN) as well as soil total
carbon (TC) were measured by an elemental analyzer (VarioEL III, Germany). An
extraction was performed on soil weighted as 10 g through 2 M KCl solution and the NH4+-N
as well as NO3--N contained in the soil were obtained. The NaHCO3 extraction and HClO4-H2SO4
digestion approaches were implemented to identify the available phosphorus (AP)
as well as total phosphorus (TP), independently. A measurement on the
concentrations of the NH4+-N, NO3--N, TP and AP contained within the soil were performed by
the continuous flow analytical system (SKALARSan ++, Skalar, Holland). The
samples digesting by concentrated hydrofluoric acid was implemented to estimate
the total potassium (TK) contained in the soil and ammonium leaching technique
as well as acetic acid were utilized to extract the available
potassium (AK), followed by the quantification by inductively coupled
plasma atomic emission spectrometry (ICPS-7500, Shimadze, Japan) on the
obtained compounds. The chloroform fumigation, which is obtained by 0.35 (KC)
as well as 0.4 (KN) correction factors, was adopted to analyze the biomass N
(MBN) as well as the Microbial Biomass C (MBC).
Soil DNA extraction
For all specimen, through a MOBIO
Power Soil Extraction Kit (Mo Bio Laboratories, Carlsbad, CA, USA), an
extraction was performed on the newly collected soil specimen weighted as 0.5 g
(reserved in a −80°C freezer) to obtain the microbial DNA contained in
the soil following the manufacturing protocols. Afterwards, a dilution was
conducted on the obtained DNA in DES buffer (DNA Elution Solution-Ultra Pure
Water), after which a Nano Drop 2000 spectrophotometer (Thermo Scientific, U.S.A.)
was adopted to count the DNA quantity and the obtained DNA was reserved at −20°C aimed at downstream investigation.
Illumina MiSeq sequencing
DNA obtained from every specimen
was utilized as a prototype to amplify bacterial 16S rRNA fragments adopted
within MiSeq sequencing. The V3-V4 hyper variable parts of the 16S rRNA gene
were taken to amplify by primers 338F (5′-ACTCCTACGGGAGGCAGCA3′)
and 806R (5′- GGACTACHVGGGTWTCTAAT-3′). A 6 bp barcode sequence
exclusive to every specimen was introduced to the primers to distinguish
various specimens. The followings are the PCR conditions: 94℃ over
5 min, 28 cycles of 94℃
over 30 s, 55℃ over 30 s, 72℃ over 60 s, ending with an
extension at 72℃ over 7 min. The PCR reacts inside a triplicate within a
25 µL mixture
containing 12.5 µL
2x Taq Plus Master Mix,1 µL (5 umol.L−1) of each primer, 3 µL BSA, 30 ng prototype DNA and double-distilled
water. Purification and pooling were performed on the PCR products, which were
taken with equimolar concentrations, and paired-end sequenced (2 × 300 bp) was
conducted by the Illumina MiSeq platform (Allwegene
BioPharm Technology Co., Ltd., Beijing, China).
Analysis on the sequencing data
De-multiplexation and quality
filtration were performed on the unprocessed FASTQ data by QIIME software and
the paired reads were joined by FLASH software. A removal was performed on the
sequences less than 200 bp with ambiguous base ‘N’ as well as an average base
quality score less than 20 for later exploration. Chimera was eliminated from
trimmed sequences by a Uchime algorithm. By CD-HIT, sequences with high quality
were clustered into Operational Taxonomic Units (OTUs) at 97% sequence
similarity (Li and Godzik 2006).
Alignment was performed on the
representative sequences from every phylotype by the Python nearest alignment
space termination (PyNAST) tool (Caporaso et al. 2010) and a relaxed neighbor-joining tree was constructed with Fast-Tree software
(Price et al. 2009).
Taxonomic information contained in every 16S rRNA gene sequence was identified
by the Ribosomal Database Project (RDP) classifier, where the confidence
threshold is 0.80 (Cole
et al. 2014). A random extraction was performed on every specimen
sequences for α-diversity
as well as β-diversity analyses, where the minimum sequencing number was
arbitrarily chosen for every specimen aimed at following community analysis.
Statistical analysis
The assessment on the soil
characteristics was performed for differences manipulation through one-way
analysis of variance (ANOVA) and Pearson correlation analysis was adopted to
investigate potential correlations a midst bacterial community, bacterial
variety, and soil characteristic. The SPSS version 22.0 software was implemented
to perform the ANOVA and Pearson analyses. The Venn diagrams were constructed
by R software (v.3.2.5, R Development Core Team 2015) presenting the quantity
of shared OTUs. The bacterial community constitution diversity was investigated
through principal component analysis (PCA). Variations in relative abundance of
phyla and genus for various altitudes were performed by kruskal-wallis method
using SPSS 22.0. Mantel’s test was implemented to identify the statistical
significance for the relationships between bacterial communities and soil
characteristic, where soil characteristics that exhibits significant influences
(P < 0.05) were chosen for canonical correlation analysis (CCA). The
“vegan” package of R software (v.3.2.5, R Development Core Team 2015) was
implemented to perform the analyses.
Results
Soil physico-chemical properties and
soil enzymes along the different altitudes of D. angustifolia population
Except for soil Acid protease and
sand, all other parameters of soil physio-chemical properties
and enzymes analyzed differed significantly (P < 0.05) among the six D. angustifolia populations at six altitudes
(Table 1). Soil moisture (SMC) was higher for the low altitude than for the
high altitude and ranged from 44.0% (A) to 33.4% (D) (Table 1). Soil pH was between 5.5
(A) and 4.6 (B) (Table 1). Soil organic carbon was between
14.3 (C) and 9.0 (E) (Table 1). Ammonium nitrogen was between 2.0
(B) and 0.7 (A) (Table 1). Nitrate nitrogen was between 1.9 (A) and 0.2 (F)
(Table 1). Total nitrogen was between 19.3 (B) and 9.9 (A). Total soil
potassium was between 4.8 (E) and 3.1 (A). Soil total phosphorus was between
0.1 (A) and 0.0 (B). Available potassium was between 24 (B) and 13.9 (D).
Available phosphorus was between 20.6 (C) and 10.3 (F). Silt was
between 1.6 (F) and 0.5 (D). Clay was between 5.2 (E) and 4.3 (A). Soil
microbial biomass carbon was between 675.5 (D) and 281.8 (C). Soil microbial
biomass nitrogen was between 89.3 (B) and 69.0 (A).
Rarefaction curve
The rarefaction curve reflects the sample depth and can be used to
evaluate whether the sequencing volume is sufficient to cover all groups. Fig.
1 shows the dilution curve for all samples in this test under the condition of
similarity of 0.97. As shown in Fig. 1, all soil sample dilution curves tended
to flatten, indicating that sampling was reasonable, and the confidence in the
bacterial community structure in the actual environment was high, which could
reflect the bacterial community of a soil sample in a relatively real way.
Analysis of soil bacterial
alpha diversity
From the Fig. 2, both the Chao
Index and Observed_species and Shannon-Wiener index and PD_whole_tree differed
significantly (one-way ANOVA, P < 0.01)
among the six altitudes (Fig. 2). For Chao Index, A and B did not differ
significant (one-way ANOVA Tukey test, P > 0.05) and C, D, E, F did not differ
significant (one way ANOVA Tukey test, P > 0.05), but the A and E differed significantly
(one way ANOVA Tukey test, P < 0.05)
and B differed with D, E and F significantly (one way ANOVA Tukey test, P < 0.05). For Observed_species, A and B
did not differ significant (one-way ANOVA Tukey test, P > 0.05) and differ significant with C, D, E, F (one way ANOVA
Tukey test, P < 0.05);
B differ significant with C, D, E, F (one way ANOVA Tukey test, P < 0.05);
C did not differ significant with D, E, F (one way ANOVA Tukey test, P > 0.05);
D did not differ significant with E and F (one way ANOVA Tukey test, P > 0.05); E and F differ significant
(one way ANOVA Tukey test, P < 0.05).
For PD_whole_tree index, A and B did not
differ significant (one-way ANOVA Tukey test, P > 0.05), and differ significant with C, D, E, F (one way ANOVA
Tukey test, P < 0.05);
B differ significant with C, D, E, F (one way ANOVA Tukey test, P < 0.05);
C did not differ significant with D, E, F (one way ANOVA Tukey test, P > 0.05); D
did not differ significant with E and F (one way ANOVA Tukey test, P > 0.05); E and F did not differ
significant (one way ANOVA Tukey test, P >
0.05). For Shannon index, A and B did not differ significant (one Table 1: Soil
physico-chemical characteristics of D.
angustifolia population at the different altitude in Changbai Mountains,
Northeastern China
A |
B |
C |
D |
E |
F |
|
37.6 ± 0.89b |
35.9 ± 1.03b |
33.4 ± 1.06b |
34.4 ±1.17b |
36.0 ± 5.29b |
||
pH |
5.5 ± 0.15a |
4.6 ± 0.15b |
4.6 ± 0.08b |
4.6 ± 0.09b |
4.7 ± 0.09b |
4.7 ± 0.08b |
0.7 ± 0.13d |
2.0 ± 0.06a |
1.3 ± 0.06bc |
0.8 ± 0.03d |
1.1 ± 0.09c |
1.4 ± 0.12b |
|
NO3- |
1.9 ± 0.07a |
0.4 ± 0.02b |
0.2 ± 0.02d |
0.2 ± 0.01d |
0.3 ± 0.01c |
0.2 ± 0.00d |
10.3 ± 0.63b |
10.1 ± 0.36b |
14.3 ± 1.02a |
9.4 ± 0.60b |
9.0 ± 1.24b |
9.5 ± 0.67b |
|
9.9 ± 0.08c |
19.3 ± 0.86a |
15.0 ± 0.74b |
11.0 ± 0.51c |
14.6 ± 0.53b |
14.6 ± 0.83b |
|
3.1 ± 0.28b |
4.7 ± 0.19a |
3.5 ± 0.29b |
4.6 ± 0.40a |
4.8 ± 0.32a |
3.3 ± 0.13b |
|
TP |
0.1 ± 0.01a |
0.0 ± 0.01b |
0.1 ± 0.00a |
0.0 ± 0.01b |
0.1 ± 0.00b |
0.1 ± 0.00b |
AK |
17.7 ± 0.63b |
24.0 ± 0.60a |
16.6 ± 0.33c |
13.9 ± 0.60e |
14.0 ± 0.21e |
15.1 ± 0.33d |
AP |
11.7 ± 0.31d |
17.0 ± 0.22b |
20.6 ± 0.61a |
15.1 ± 0.22c |
15.1 ± 0.45c |
10.3 ± 0.53e |
Sand (%) |
94.7 ± 4.50a |
96.7 ± 6.24a |
94.8 ± 4.08a |
95.2 ± 4.92a |
94.5 ± 4.92a |
95.2 ±4.92a |
Silt (%) |
1.1 ± 0.08c |
0.6 ± 0.05d |
1.3 ± 0.05b |
0.5 ± 0.03d |
1.3 ± 0.05b |
1.6 ±0.04a |
Clay (%) |
4.3 ± 0.22c |
4.8 ± 0.25ab |
4.3 ± 0.21c |
5.1 ± 0.08a |
5.2 ± 0.12a |
4.5 ± 0.34bc |
516.5 ± 4.90b |
569.4 ± 5.73b |
281.8 ± 4.55d |
573.4 ± 4.11b |
527.1 ± 4.11c |
||
MBN |
69.0 ± 2.05d |
89.3 ± 2.94a |
80.6 ± 3.30bc |
84.7 ± 2.05ab |
77.1 ± 2.87c |
76.8 ± 2.45c |
1Values represent means ± standard deviations (n=3).
Different letters indicate significant (P
< 0.05) differences between individual means assessed by one-way
factorial analysis of variance (ANOVA) followed by Tukey’s HSD post-hoc
testing. Abbreviations: SMC, soil moisture content; NH4+,
Ammonium nitrogen; NO3-, Nitrate nitrogen; SOC, soil
organic cabon; TN, total nitrogen; TK, Total potassium; TP, Total phosphorus;
AK, Effective potassium; AP, Effective phosphorus; MBC, Microbial biomass
carbon; MBN, Microbial biomass nitrogen. Note: A is 1690 m altitude;
B is 1800 m altitude; C is 1860 m altitude; D is 1910 m altitude; E is 1950 m
altitude; F is 2020 m altitude. The same below
Fig. 1: Rarefaction curve of D. angustifolia population along different altitude
in Changbai Mountains, Northeastern China
Note: A (1-3) is 1690 m altitude; B (1-3) is 1800
m altitude; C (1-3) is 1860 m altitude; D (1-3) is 1910 m altitude; E (1-3) is
1950 m altitude; F (1-3) is 2020 m altitude. The same below
Fig. 2: Bacterial alpha diversity of D. angustifolia population along
different altitude in Changbai Mountains, Northeastern China
Note: A is altitude of 1690 m; B is altitude of
1800 m; C is altitude of 1860 m; D is altitude of 1910 m; E is altitude of 1950
m e; F is altitude of 2020 m. The same below
way ANOVA Tukey test, P > 0.05) and differ significant with
C, D, E, F (one-way ANOVA Tukey test, P <
0.05); B differ significant with C, D, E, F (one way ANOVA Tukey test, P < 0.05); C did not differ
significant with D, E, F (one way ANOVA Tukey test, P > 0.05); D did not differ significant with E and F (one way
ANOVA Tukey test, p>0.05); E and F did not differ significant (one way ANOVA
Tukey test, p>0.05).
Analysis of
soil bacterial beta diversity
The bacterial diversities of the
whole soil specimens are depicted as a PCA plot in Fig. 3, which apparently
exhibit that the whole soil specimens were partitioned into three collections
in terms of the location of sampling, where the altitude is the first and
second principal components coordinate (PC1, 41.74% and PC2, 16.63%) (Fig. 3). A
and B differed significant with C, D, E, F along with the first principal
components coordinate and the F differed significant with A, B C, D, E (Fig.
3). Anosim result is R = 0.97, P
= 0.001.
Composition of soil bacterial community
At the level of the phylum,
bacteria are distributed in 13 known bacterial phyla except of
the unclassified population. As shown in Fig. 4, the relative abundance of
Proteobacteria, Bacteroidetes, Acidobacteria and Actinobacteria is relatively
high, and the relative abundance more than 95% of the total amount of soil
bacteria.
Table 3 shows the bacterial species
that have significant differences at different altitudes (relative abundance
>1%). It can be seen from Table 3 that there are 6 soil bacterial species
relative abundance changes under different altitude gradients, namely the dominant
species Chloroflexi, Verrucomicrobia and Planctomycetes, Bacteroidetes,
Firmicutes, Gemmatimonadetes. The difference between Acidobacteria,
Proteobacteria and Actinobacteria was not significant. Among them, the relative abundance of Chloroflexi is
the highest in A, F is the lowest; Verrucomicrobia is the highest in E, A is
the lowest; Planctomycetes is the
highest in E, A is the lowest; Bacteroidetes is the highest in B, the lowest in
E; Firmicutes is the highest in F, the lowest in A Gemmatimonadetes are the
highest in B and the lowest in F.
Fig. 3: Bacterial beta diversity of D. angustifolia population along different
altitudes in Changbai Mountains, Northeastern China.
β-Diversity indexes was calculated at the OTU level (97%)
Note: A is altitude of 1690 m; B is
altitude of 1800 m; C is altitude of 1860 m; D is altitude of 1910 m; E is
altitude of 1950 m; F is altitude of 2020 m
Table 3 shows the bacterial genus
(relative abundance > 1%) with significant differences at different
altitudes. It can be seen from Table 3 that in addition to the unclassified
genus, there are 6 soil bacterial genus relative abundance changes under
different altitude gradients, which are dominant genus RB41, Bryobacter, Haliangium, Acidothermus, Reyranella,
Rhizomicrobium. The difference
between Candidatus_Solibacter and unidentified was not
significant. Among them, the relative abundance of RB41 was the highest in A, B was the lowest; Bryobacter was the highest in F and A was the lowest; Haliangium was the highest in B and lowest in D; Acidothermus was the highest in D and lowest in A; Reyranella was the highest in D and
lowest in C. Rhizomicrobium is the
highest in F and lowest in A.
Fig. 4: Relative abundance of the dominant bacterial
phyla under different altitudes in Changbai Mountains, Northeastern China
Bacterial communities with statistically significant
differences
Beyond the identification of a- as well as b-diversities,
an additional main objective of bacterial community’s comparison is to
determine specific communities within specimens. Therefore, a LEfSe tool (33)
was utilized, which enables the analysis on microbial community data at any
clade. Note that the computation required for analyzing the OTUs obtained in
the current investigation is time-consuming, limiting only statistical analysis
from the domain to the genus level. Cladograms showed the groups and LEfSe (Fig.
5) was implemented to confirm the LDA scores which are three and beyond. In A, seven
groups of bacteria were significantly enriched, namely Chloroflex
(from phylum to genus), Actinobacteria (from order of Thermoleophilia to family
of Glaiellales and from phylum of Subgroup6 to genus of unidentified), Subgroup
17 (from phylum to family), Blastocatellis (from phylum to family),
Betaproteobacteria (from phylum to family), Nitrospira (from phylum to family)
(Fig. 5). In B, nine
groups of bacteria were significantly enriched, namely Bacteroidetes (from class to genus), Chlamydiae (from family of
Chlamydiae to genus of genus of Chlamydiales), Ktedonobacteria (from phylum to
family), Actinobacteria (from family to genus), Verrucomicrobia (from phylum to
genus), class of HSB_OF53_F07, Haliangiaceae (from phylum to class),
Burkholderiales, Xanthobacteraceae, Gemnatimocadaceae (from class to family).
Table 2: Differences in relative abundance of phyla
(>1%) and genus (>1%) between the different altitudes (means)
Phylum |
A |
B |
C |
D |
F |
P_value |
|
32.1% |
30.0% |
39.4% |
33.6% |
39.0% |
28.5% |
0.09ns |
|
Proteobacteria |
31.6% |
32.6% |
26.0% |
33.0% |
26.4% |
41.7% |
0.09ns |
11.2% |
9.3% |
9.3% |
7.4% |
11.0% |
5.2% |
0.01** |
|
4.1% |
4.3% |
7.2% |
7.4% |
8.5% |
4.5% |
0.02* |
|
6.7% |
7.5% |
5.7% |
6.0% |
4.3% |
5.6% |
0.05ns |
|
2.3% |
3.1% |
4.8% |
4.1% |
3.4% |
3.9% |
0.02* |
|
3.1% |
3.5% |
1.6% |
2.1% |
1.5% |
2.7% |
0.02* |
|
0.6% |
1.0% |
1.8% |
2.1% |
2.0% |
4.1% |
0.01** |
|
1.9% |
2.1% |
1.2% |
1.0% |
0.8% |
0.8% |
0.02* |
|
Genus |
|
|
|
|
|
|
|
g__unidentified |
74.0% |
72.3% |
74.3% |
69.8% |
75.0% |
62.7% |
0.09 ns |
3.1% |
2.5% |
3.8% |
3.8% |
3.8% |
4.8% |
0.06 ns |
|
g__RB41 |
2.1% |
0.3% |
0.5% |
0.3% |
0.5% |
0.3% |
0.01** |
g__Bryobacter |
1.7% |
2.7% |
2.2% |
2.7% |
2.2% |
3.7% |
0.02* |
g__Haliangium |
1.4% |
1.5% |
0.8% |
0.7% |
0.7% |
1.1% |
0.01* |
g__Acidothermus |
1.3% |
2.1% |
2.5% |
2.6% |
1.7% |
1.9% |
0.03* |
g__Reyranella |
1.0% |
0.9% |
0.6% |
1.2% |
0.9% |
1.6% |
0.02* |
0.8% |
1.6% |
1.1% |
1.2% |
1.0% |
1.9% |
0.01* |
Note: The level of significance determined by kruskal-wallis
method is listed (**P <
0.01, ∗P < 0.05, ns: not significant).
Italics indicate minimal abundance and bold indicates maximum abundance
Table 3: Pearson correlation analyses of physiochemical
properties and soil bacterial community structure
|
SWC |
pH |
NH4 |
SOC |
TN |
TK |
TP |
AK |
AP |
|
Chao1 |
0.312 |
-0.014 |
0.452 |
0.189 |
0.288 |
0.358 |
0.115 |
0.012 |
0.769** |
0.260 |
Observe species |
0.615** |
0.346 |
0.366 |
0.545* |
0.095 |
0.238 |
-0.137 |
0.151 |
0.840** |
-0.066 |
PD |
0.593** |
0.317 |
0.359 |
0.531* |
0.042 |
0.233 |
-0.083 |
0.097 |
0.827** |
-0.078 |
Shannon |
0.698** |
0.482* |
0.318 |
0.649** |
-0.030 |
0.200 |
-0.175 |
0.179 |
0.818** |
-0.196 |
* meant significant difference at 0.05 level among
treatments
** meant significant difference at 0.01 level among
treatments
In C, three groups of bacteria were
significantly enriched, namely Planctomycetes (from phylum to
genus), subgroup2 (from plylum to family) and DA111. In D, three groups of
bacteria were significantly enriched, namely Acidothermaceae and unidentified.
In E, three groups of bacteria were significantly enriched, namely Holophagae,
EJG37_AG_4, Spartobacteria (from phylum to genus). In F, seven groups of
bacteria were significantly enriched, namely Clostridia, Caulobacterales,
Roseiarcaceae, Acetobacteraceae, Rhodospirillales,
Xanthomonadales_Incertae_Sedis and Gammaprobacteria.
Relationship between bacterial community structure and
environmental characteristics
RDA exhibited that the formation of
microbial community structure was the result of main environment
properties (such as pH, NO3--N, NH4-N,
moisture, organic carbon, total nitrogen, and AK, AP, TK, TP). As shown in Fig.
6, NO3--N (P
< 0.01), pH (P < 0.01), AK (P < 0.01), AP (P < 0.05) and soil moisture (P
< 0.01) significantly affected the bacterial community structure.
Discussion
The soil bacterial community, which is the representative of every
altitudinal site, can be explained by the variation of soil as well as plant properties,
alongside the gradients of the altitude (Siles and Margesin 2017). The alpha
diversity of the bacterial varies alongside the gradients of the altitude,
which was demonstrated by our outcomes (Fig. 2), since the variations of soil
moisture content, pH and NO3- and AK as a function of the
gradients of the altitude considerably influence bacterial (Table 3). Several
reports made a suggestion on the bacterial response (Nie et al. 2009;
Shen et al. 2013; Siles and Margesin 2017).
Altitude changes usually cause changes in climatic environmental factors and
dramatic changes in material turnover over a short geographic distance (Yu et al. 2005). As a sensitive indicator of soil
ecosystem, soil microbial community structure will respond very quickly to changes in the
surrounding environment. In this paper, the soil bacterial diversity of different leaflet populations also changed with the
elevation. As the altitude increases, the soil bacteria Chao1,
Observed_species, PD_ whole_tree and Shannon indices all show a downward trend, that is, high altitude causes the
bacterial alpha diversity to decrease. Similarly, soil bacteria alpha has been
shown to vary
Fig.5: Cladogram exhibiting the phylogenetic distribution of the bacterial
lineages linked to soil from six Deyeuxia
angustifolia populations along with different altitude in
Changbai Mountains, Northeastern China (a). Indicator bacteria havingLDA scores no less than three in
bacterial communities linked to soil from the six Deyeuxia angustifolia populations with different altitude in Changbai
Mountains, Northeastern China (b).
The phylogenetic levels from domain to genus is indicated by circles, of which
the radius is positively linear dependence on the group abundance
Fig.6: Redundancy analysis (RDA) of Miseq data (symbols) and environmental
characteristics (arrows)
significantly along the elevation
gradient (Han et al. 2018). Previous studies have also observed that some alpine soil
bacterial community structures are not significantly different between
different altitude gradients (Li et al.
2017). For example, Zhang et al. (2014) used pyrosequencing to study the
soil bacterial diversity along the four forest types of evergreen broad-leaved
forest, deciduous broad-leaved forest, subalpine dark coniferous forest and
subalpine shrub in Shennongjia Nature Reserve. The distribution pattern shows
that the bacterial diversity shows a distinct monotonous decreasing trend with
the increase of altitude; Margesin et al. (2009) and Bryant et al.
(2008) also found that the bacterial diversity appeared with the elevation. The
downward trend; Singh et al. (2012)
PCR amplification and sequencing of soil bacteria at an altitude of 1000~3700 m
in Mount Fuji showed that the variation of bacterial diversity showed a
single-peak curve with elevation, at an altitude of 2500 m. The diversity of
bacteria is the highest; Wang and Liu (2012) and others in the Laojun Mountain
in Yunnan at an altitude of 1820~4050 m, along a rocky stream, using
high-throughput sequencing technology to obtain the diversity of bacteria as
the altitude decreases first and then rises. It has a concave curve; Fierer et
al. (2011) and Shen et al. (2013) even believe that soil bacterial
diversity does not show obvious changes in altitude gradient.
In this study, the soil bacterial
diversity index differed significantly at different altitude gradients and
increased with increasing altitude between AB m. After reaching B, it began to decline
(Table 1), reaching the lowest E. It then rises to a concave curve, similar to
the findings of Wang et al. (2008). The variation of bacterial diversity is closely related to
soil water content, and the changes of altitude with altitude are basically the
same. In Pearson correlation analysis, the Shannon diversity index of bacteria
is significantly positively correlated with water content (Table 3).
Furthermore, analysis on the
community structure response to the gradients of altitude showed that the
microbial beta diversity of soil varied considerably with the gradients of
altitude (Fig. 3), which was significantly associated with soil moisture amidst
the environment factors (Fig. 6). This might be due to either variation of
ecological strategy or limited oxygen available for aerobic microbes,
eventually leading to variations in the microbial community (Allen 2011;
Fierer et al. 2011; Meng et al. 2013). Additionally, the
variation of soil pH alongside the gradients of altitude contributed to the
changes of beta diversity of the bacteria (Table 2), which was confirmed by us
and was also demonstrated by the reported results (Shen et al. 2013). Generally, the aforementioned outcomes confirmed that
the gradients of altitude showed primary influences on the beta diversity of
the soil bacteria, where there is a dependence of the differential responses on
climatic variables (soil moisture).
At the level of the phylum, the
composition of soil bacteria in different altitudes is basically the same,
which is different from soil types of different regions (Italy, Norway,
Germany, Russia, the United States and the Netherlands) by Janssen (2006) (farming farmland, no-till
farmland, abandoned farmland). The results of bacterial community structure in
organic soil, mineral soil, forest, grassland, tundra and desert are similar,
in which Proteobacteria and Acidobacteria are dominant,
accounting for 39 and 20%, followed by Actinobacteria, Verrucomicrobia,
Bacteroidetes, Chloroflexi, Planctomycetes, Gemmatimonadetes and Firmicutes,
etc., it can be seen that at the level of the door, different ecosystems,
different soil types
The dominant flora of the type is
basically the same (Janssen 2006; Green and Bohannan 2013). However, at
different altitudes, soil bacterial gate level abundance is different (Fig. 6
and Table 3). The relative abundance of other bacterial gates was significantly
different except for the difference in acid bacteria, proteobacteria, and
actinomycetes. The reason for the analysis may be due to differences in soil
physical and chemical factors at different altitudes. It can be seen from CCA
that the effects of physicochemical factors on acid bacteria, proteobacteria,
and actinomycetes are not significant, while other bacteria mainly receive soil
pH, AK, MC and NO3-. Shen et al. (2013) analyzed the
bacterial community at different altitudes and found that pH is the main reason
affecting the distribution of soil bacterial communities. Blaž et al. (2008) found that soil bacterial
communities are mainly related to soil water content. Therefore, these results suggested
that differential responses of soil bacterial community composition to the
altitudinal gradients were largely dependent on climate factors (soil moisture)
and on the dynamics of soil physical-chemistry properties (e.g., pH, SOC, AP, TP, NO3-, NH4+).
At the genus level, there are
certain differences in the species composition of bacteria at each altitude.
The total genus accounts for 65.69% of the total genus, accounting for 96.48%
of the total relative abundance; the main genus with a relative abundance of
more than 1% The species were basically the same, but the relative abundance of
29.30% of the common genus was significantly different between altitudes.
Janssen (2006) also suggested that although the dominant populations of
bacteria differed among different soil types, the abundance was significantly different,
and the abundance may be affected by soil environmental conditions including
biological, chemical and physical factors. In this study, soil moisture content
and pH as a function of altitude are key factors that have a significant impact
on the relative abundance of dominant species (see Fig. 2–6), which is similar
to most people's findings (Shen et al.
2013; Zhang et al. 2013). In addition, differences in
habitat composition at different altitudes are also important factors
influencing the abundance of the flora, as evidenced by the full sample
similarity analysis (Fig. 2–5). The soil nutrient content, water content and pH
value of CCA (Fig. 2–7) have a high contribution rate to soil microbial
community structure differences at different altitude gradients. Therefore,
soil microbial abundance can directly respond to changes in ecological
conditions (Zhang et al. 2013) and is
closely related to soil nutrient content, water content and pH value (Shen et al. 2013).
Conclusion
Large-scale altitudinal gradients result in variations of
microbial biomass, diversity of bacteria, and community constitutions. The
nitrogen as well as carbon content inside a plant-soil system alongside the
altitudinal gradients, though responding differently to altitude gradients, can
be reflected by the dynamics of soil microbial biomass. The analysis on the
microbial diversity patterns exhibit that more alpha diversity of bacteria was
involved in the sites at A and B altitude alongside the altitudinal gradients,
where the differential responses were primarily as a consequence of the soil
physical-chemistry properties dynamics. Proteobacteria and Acidobacteria are
most abundant and dominant phyla in all six altitudes; the aboveground
vegetation may the key factor influence the soil bacterial composition. The
soil moisture of different variations as a result of altitudinal gradients
could be implemented as the potential variables to predict the beta diversity
of microbial though without the same influence involved, due to the constitution
variations of bacterial community. In addition, the soil pH and soil NO3-,
AK, TP were positive with low altitudes (A and B) as well as NH4+,
AP, SOC and TK were positive with high altitudes (C, D, E, F). The driving
environmental factors on soil bacterial community structures were different.
There still need to reveal the response of bacterial community to plant
invasion and climate change in Changbai Mountains. Our results accentuated that
the altitudinal gradients could shape several of bacterial community’s
patterns, revealing the microbial biodiversity as well as their ecological
effects on the climate change.
Acknowledgement
This
research was supported by the National Natural Science Foundation of China (NO.
31470019, 41575153) as well as State Forestry and Grassland Bureau of China commissioned
project.
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